Draw
2024/251/64-finals
| 1 | Maksatransport | Bye | |
| 2 | Bye | Parnu | |
| 3 | Tamper | JK Poseidon | 4 : 1 |
| 4 | Bye | Tartu Welco 2 | |
| 5 | Tallinna Kalev | Bye | |
| 7 | EstHam United | Bye | |
| 8 | Bye | Inter Tartu | |
| 9 | Levadia | Bye | |
| 11 | Tulevik | Zealot Sporting | 2 : 1 |
| 12 | Bye | Jarva-Jaani | |
| 13 | Vastseliina Tannem | Vana Hea Puur | 5 : 0 |
| 14 | Bye | Tabasalu Ulasabat | |
| 15 | Haapsalu | Bye | |
| 16 | Bye | Rumori Calcio | |
| 17 | Kristiine | Bye | |
| 18 | Legion | Raplamaa | 3 : 1 |
| 19 | Johvi Phoenix | Bye | |
| 20 | Bye | Kohvile | |
| 21 | Tartu Welco | Bye | |
| 22 | Flora U21 | Saue Laagri | 4 : 0 |
| 23 | Kalju | Bye | |
| 24 | Bye | Eston Villa | |
| 25 | Kuusalu Kalev | Bye | |
| 26 | Bye | Tartu Helios | |
| 27 | Saae Latte | Bye | |
| 28 | Bye | Hiiumaa | |
| 29 | Flora | Bye | |
| 32 | Bye | Paide | |
| 33 | Flora U19 | Bye | |
| 34 | Bye | Tallinna Kalev U21 | |
| 35 | Tallinna FC Zapoos | Bye | |
| 36 | Bye | Sillamae Silmet | |
| 37 | TransferWise | Bye | |
| 38 | Kose II | Harju JK Laagri | 0 : 26 |
| 39 | Nomme Utd | Bye | |
| 40 | Kohtla-Jarve Linnameeskond | Soccernet | 4 : 0 |
| 41 | Kubik | Bye | |
| 42 | Bye | Marjamaa Kompanii | |
| 43 | Hell Hunt | Bye | |
| 44 | Tallinna Kalev III | Tabasalu | 0 : 6 |
| 45 | Loo JK | Bye | |
| 46 | Bye | Helm | |
| 47 | Tallinna Wolves | Bye | |
| 48 | Bye | Elva | |
| 49 | Saku Sporting | Bye | |
| 50 | Bye | FC Tallinn | |
| 51 | Tallinna GameSport | Bye | |
| 52 | Bye | Tammeka | |
| 53 | Parnu JK Vaprus | Bye | |
| 54 | Bye | Olympic Tallinn | |
| 55 | Tallinna Smsraha | Bye | |
| 56 | Bye | FC Ararat | |
| 57 | Maardu Aliens | Bye | |
| 58 | Viimsi JK | Kuressaare | 0 : 1 |
| 59 | Kose | Tartu Kalev | 1 : 6 |
| 60 | Bye | Pelgu City | |
| 61 | Narva | Bye | |
| 62 | Bye | Arukula Vigri | |
| 63 | Lootos | Bye | |
| 64 | Bye | Tallinna Starmedia |
1/32-finals
| 1 | Maksatransport | Parnu | 3 : 1 |
| 2 | Tamper | Tartu Welco 2 | 3 : 1 |
| 3 | Tallinna Kalev | Bye | |
| 4 | EstHam United | Inter Tartu | 0 : 4 |
| 5 | Levadia | Bye | |
| 6 | Tulevik | Jarva-Jaani | 3 : 0 |
| 7 | Vastseliina Tannem | Tabasalu Ulasabat | 1 : 5 |
| 8 | Haapsalu | Rumori Calcio | 5 : 1 |
| 9 | Kristiine | Legion | 0 : 5 |
| 10 | Johvi Phoenix | Kohvile | 3 : 1 |
| 11 | Tartu Welco | Flora U21 | 2 : 3 |
| 12 | Kalju | Eston Villa | 11 : 1 |
| 13 | Kuusalu Kalev | Tartu Helios | 0 : 4 |
| 14 | Saae Latte | Hiiumaa | 2 : 6 |
| 15 | Flora | Bye | |
| 16 | Bye | Paide | |
| 17 | Flora U19 | Tallinna Kalev U21 | 0 : 6 |
| 18 | Tallinna FC Zapoos | Sillamae Silmet | 4 : 3 |
| 19 | TransferWise | Harju JK Laagri | 0 : 15 |
| 20 | Nomme Utd | Kohtla-Jarve Linnameeskond | 9 : 0 |
| 21 | Kubik | Marjamaa Kompanii | 3 : 4 |
| 22 | Hell Hunt | Tabasalu | 1 : 3 |
| 23 | Loo JK | Helm | 2 : 4 |
| 24 | Tallinna Wolves | Elva | 0 : 8 |
| 25 | Saku Sporting | FC Tallinn | 1 : 2 |
| 26 | Tallinna GameSport | Tammeka | 0 : 24 |
| 27 | Parnu JK Vaprus | Olympic Tallinn | 11 : 0 |
| 28 | Tallinna Smsraha | FC Ararat | 1 : 3 |
| 29 | Maardu Aliens | Kuressaare | 0 : 12 |
| 30 | Tartu Kalev | Pelgu City | 7 : 0 |
| 31 | Narva | Arukula Vigri | 7 : 0 |
| 32 | Lootos | Tallinna Starmedia | 0 : 3 |
1/16-finals
| 1 | Maksatransport | Tamper | 0 : 3 |
| 2 | Tallinna Kalev | Inter Tartu | 14 : 0 |
| 3 | Levadia | Tulevik | |
| 4 | Tabasalu Ulasabat | Haapsalu | |
| 5 | Legion | Johvi Phoenix | 4 : 3 |
| 6 | Flora U21 | Kalju | 0 : 7 |
| 7 | Tartu Helios | Hiiumaa | 1 : 3 |
| 8 | Flora | Paide | |
| 9 | Tallinna Kalev U21 | Tallinna FC Zapoos | 2 : 5 |
| 10 | Harju JK Laagri | Nomme Utd | 3 : 0 |
| 11 | Marjamaa Kompanii | Tabasalu | 0 : 2 |
| 12 | Helm | Elva | 1 : 5 |
| 13 | FC Tallinn | Tammeka | |
| 14 | Parnu JK Vaprus | FC Ararat | 10 : 0 |
| 15 | Kuressaare | Tartu Kalev | 7 : 0 |
| 16 | Narva | Tallinna Starmedia | 6 : 1 |
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