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2016 Final Stage
Quarter-finals
| 1 | Perth SC | Devonport | 6 : 1 |
| 2 | Bentleigh Greens | Edgeworth E. | 1 : 3 |
| 3 | Sydney Utd | Adelaide City | 5 : 4 |
| 4 | Canberra Olympic | Brisbane Strikers | 2 : 3 |
Semi-finals
| 1 | Perth SC | Edgeworth E. | 0 : 1 |
| 2 | Sydney Utd | Brisbane Strikers | 2 : 1 |
Final
| 1 | Edgeworth E. | Sydney Utd | 1 : 4 |
2016 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | Perth SC | 22 | 13 | 4 | 5 | 39:23 | 16 | 43 |
| 2 | Inglewood Utd | 22 | 13 | 3 | 6 | 44:32 | 12 | 42 |
| 3 | Perth RedStar | 22 | 13 | 2 | 7 | 38:29 | 9 | 41 |
| 4 | Floreat Athena | 22 | 11 | 5 | 6 | 50:32 | 18 | 38 |
| 5 | Bayswater | 22 | 12 | 2 | 8 | 43:31 | 12 | 38 |
| 6 | Sorrento | 22 | 11 | 5 | 6 | 30:28 | 2 | 38 |
| 7 | Stirling Lions | 22 | 11 | 1 | 10 | 51:32 | 19 | 34 |
| 8 | Balcatta | 22 | 8 | 1 | 13 | 37:50 | -13 | 25 |
| 9 | Cockburn City | 22 | 5 | 7 | 10 | 37:47 | -10 | 22 |
| 10 | Perth Glory U21 | 22 | 6 | 3 | 13 | 23:40 | -17 | 21 |
| 11 | Armadale | 22 | 6 | 1 | 15 | 26:41 | -15 | 19 |
| 12 | Subiaco | 22 | 5 | 2 | 15 | 20:53 | -33 | 17 |
Promotion ~ National Premier Leagues Play Offs
Promotion ~ NPL Western Australia (Play Offs: )
NPL Western Australia (Relegation)
2016 Play Offs
Quarter-finals
| 1 | Perth SC | Inglewood Utd | 2 : 1 |
| 4 | Perth RedStar | Floreat Athena | 5 : 4 |
Semi-finals
| 1 | Perth SC | Bye | |
| 2 | Inglewood Utd | Perth RedStar | 4 : 3 |
Final
| 1 | Perth SC | Inglewood Utd | 1 : 0 |