EN
2024
1/64-finals
| 1 | Imabari | Bye | |
| 2 | Bye | Vissel Kobe | |
| 3 | Toyama | Montedio Yamagata | 2 : 1 |
| 4 | Bye | Shimizu S-Pulse | |
| 5 | Nara Club | Bye | |
| 6 | Bye | Sanfrecce Hiroshima | |
| 7 | Kagoshima Utd | Chiba | 1 : 0 |
| 8 | Bye | Verdy | |
| 9 | Gainare Tottori | Bye | |
| 10 | Bye | Urawa Reds | |
| 11 | Ehime | V-Varen Nagasaki | 3 : 4 |
| 12 | Bye | Iwata | |
| 13 | Vanraure | Kanazawa | 1 : 0 |
| 14 | Bye | Kashima Antlers | |
| 15 | Giravanz Kitakyushu | Oita Trinita | 1 : 0 |
| 16 | Bye | Machida | |
| 17 | Gifu | Omiya Ardija | 1 : 2 |
| 18 | Bye | Nagoya Grampus | |
| 19 | Tegevajaro Miyazaki | Okayama | 1 : 4 |
| 20 | Bye | Yokohama FC | |
| 21 | Yamaga | Renofa Yamaguchi | 4 : 3 |
| 22 | Bye | Avispa Fukuoka | |
| 23 | Kusatsu | Sagamihara | 4 : 1 |
| 24 | Bye | Kashiwa Reysol | |
| 25 | Grulla Morioka | Tochigi SC | 1 : 0 |
| 26 | Bye | Cerezo Osaka | |
| 27 | Ryukyu | Fujieda MYFC | 2 : 1 |
| 28 | Bye | Gamba Osaka | |
| 29 | Osaka | Iwaki | 0 : 2 |
| 30 | Bye | Albirex Niigata | |
| 31 | Kamatamare | Blaublitz | 0 : 2 |
| 32 | Bye | Shonan Bellmare | |
| 33 | YSCC | Mito | 1 : 0 |
| 34 | Bye | FC Tokyo | |
| 35 | Fukushima Utd | Kumamoto | 1 : 2 |
| 36 | Bye | Sagan Tosu | |
| 37 | Azul Claro Numazu | Vegalta Sendai | 3 : 2 |
| 38 | Bye | Hokkaido Consadole Sapporo | |
| 39 | Nagano | Tokushima | 5 : 1 |
| 40 | Bye | Kyoto |
1/32-finals
| 1 | Imabari | Vissel Kobe | 1 : 2 |
| 2 | Toyama | Shimizu S-Pulse | 1 : 0 |
| 3 | Nara Club | Sanfrecce Hiroshima | 0 : 6 |
| 4 | Kagoshima Utd | Verdy | 0 : 1 |
| 5 | Gainare Tottori | Urawa Reds | 2 : 5 |
| 6 | V-Varen Nagasaki | Iwata | 1 : 0 |
| 7 | Vanraure | Kashima Antlers | 1 : 2 |
| 8 | Giravanz Kitakyushu | Machida | 1 : 2 |
| 9 | Omiya Ardija | Nagoya Grampus | 0 : 2 |
| 10 | Okayama | Yokohama FC | 3 : 4 |
| 11 | Yamaga | Avispa Fukuoka | 1 : 2 |
| 12 | Kusatsu | Kashiwa Reysol | 1 : 3 |
| 13 | Grulla Morioka | Cerezo Osaka | 0 : 1 |
| 14 | Ryukyu | Gamba Osaka | 2 : 1 |
| 15 | Iwaki | Albirex Niigata | 0 : 2 |
| 16 | Blaublitz | Shonan Bellmare | 2 : 1 |
| 17 | YSCC | FC Tokyo | 0 : 4 |
| 18 | Kumamoto | Sagan Tosu | 0 : 1 |
| 19 | Azul Claro Numazu | Hokkaido Consadole Sapporo | 1 : 3 |
| 20 | Nagano | Kyoto | 3 : 2 |
1/16-finals
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