Draw
Play Offs1/16-finals
| 1 | Gent (17) | Betis (15) | 1 : 0, 0 : 3 |
| 2 | Vitoria Guimaraes (2) | Bye | |
| 3 | TSC (24) | Jagiellonia (9) | 1 : 3, 1 : 3 |
| 4 | Cercle Brugge KSV (8) | Bye | |
| 5 | Celje (21) | APOEL (11) | 2 : 0, 2 : 2 |
| 6 | Lugano (6) | Bye | |
| 7 | Vikingur Reykjavik (19) | Panathinaikos (13) | 0 : 2, 2 : 1 |
| 8 | Fiorentina (3) | Bye | |
| 9 | FC Copenhagen (18) | Heidenheim (16) | 3 : 1, 1 : 2 |
| 10 | Chelsea (1) | Bye | |
| 11 | Molde (23) | Shamrock Rovers (10) | 2 : 0, 0 : 1 |
| 12 | Legia (7) | Bye | |
| 13 | Omonia (22) | Pafos (12) | 1 : 2, 1 : 1 |
| 14 | Djurgarden (5) | Bye | |
| 15 | Borac Banja Luka (20) | O. Ljubljana (14) | 0 : 0, 1 : 0 |
| 16 | SK Rapid (4) | Bye |
1/8-finals
| 1 | Betis (15) | Vitoria Guimaraes (2) | 4 : 0, 2 : 2 |
| 2 | Jagiellonia (9) | Cercle Brugge KSV (8) | 0 : 2, 3 : 0 |
| 3 | Celje (21) | Lugano (6) | 5 : 5, 1 : 0 |
| 4 | Panathinaikos (13) | Fiorentina (3) | 1 : 3, 3 : 2 |
| 5 | FC Copenhagen (18) | Chelsea (1) | 0 : 1, 1 : 2 |
| 6 | Molde (23) | Legia (7) | 0 : 2, 3 : 2 |
| 7 | Pafos (12) | Djurgarden (5) | 0 : 3, 1 : 0 |
| 8 | Borac Banja Luka (20) | SK Rapid (4) | 1 : 2, 1 : 1 |
Quarter-finals
| 1 | Betis (15) | Jagiellonia (9) | |
| 2 | Celje (21) | Fiorentina (3) | |
| 3 | Chelsea (1) | Legia (7) | |
| 4 | Djurgarden (5) | SK Rapid (4) |
Semi-finals
| 1 | TBD #1 | TBD #2 | |
| 2 | TBD #3 | TBD #4 |
Final
| 1 | TBD #1 | TBD #2 |
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