2016 Main
Group A
| Pl | W | W | L | L | Pts | |||
| 1 | Baltika | 2 | 2 | 0 | 0 | 0 | 3:1 | 6 |
| 2 | FK Novosibirsk | 2 | 0 | 1 | 0 | 1 | 2:2 | 2 |
| 3 | Tomsk | 2 | 0 | 1 | 0 | 1 | 2:2 | 2 |
| 4 | SKA Khabarovsk | 2 | 0 | 0 | 2 | 0 | 1:3 | 2 |
Group B
| Pl | W | W | L | L | Pts | |||
| 1 | Shinnik Yaroslavl | 2 | 1 | 1 | 0 | 0 | 6:4 | 5 |
| 2 | Zenit 2 | 2 | 1 | 0 | 1 | 0 | 4:4 | 4 |
| 3 | Yenisey | 2 | 0 | 1 | 0 | 1 | 3:3 | 2 |
| 4 | Arsenal Tula | 2 | 0 | 0 | 1 | 1 | 1:3 | 1 |
Group C
| Pl | W | W | L | L | Pts | |||
| 1 | Volgar-Astrakhan | 2 | 1 | 1 | 0 | 0 | 4:1 | 5 |
| 2 | Fakel Voronezh | 2 | 1 | 0 | 1 | 0 | 5:2 | 4 |
| 3 | Krasnodar 2 | 2 | 1 | 0 | 0 | 1 | 1:2 | 3 |
| 4 | Chertanovo M | 2 | 0 | 0 | 0 | 2 | 0:5 | 0 |
Group D
| Pl | W | W | L | L | Pts | |||
| 1 | Tyumen | 2 | 1 | 0 | 0 | 0 | 5:1 | 4 |
| 2 | Orenburg | 2 | 0 | 1 | 0 | 0 | 2:1 | 3 |
| 3 | Spartak Moscow 2 | 2 | 1 | 0 | 0 | 1 | 5:6 | 3 |
| 4 | Volgar-Astrakhan 2 | 2 | 0 | 0 | 1 | 1 | 2:6 | 1 |
Promotion ~ FNL Cup (Play Offs: )
2016 Placement Play Offs
Final
| 1 | Shinnik Yaroslavl | Orenburg | 0 : 1 |
3rd place
| 2 | Baltika | Volgar-Astrakhan | 0 : 2 |
5th place
| 3 | Zenit 2 | Fakel Voronezh | 1 : 4 |
7th place
| 4 | Tomsk | Tyumen | 1 : 0 |
9th place
| 5 | FK Novosibirsk | Spartak Moscow 2 | 0 : 1 |
11th place
| 6 | Yenisey | Krasnodar 2 | 2 : 1 |
13th place
| 7 | Arsenal Tula | Volgar-Astrakhan 2 | 2 : 1 |
15th place
| 8 | SKA Khabarovsk | Chertanovo M. | 4 : 0 |
2016 Play Offs
Final
| 1 | SKA Khabarovsk | Arsenal Tula | 0 : 2 |
| 2 | FK Novosibirsk | Yenisey | 2 : 1 |
| 3 | Tomsk | Zenit 2 | 0 : 2 |
| 4 | Baltika | Shinnik Yaroslavl | 0 : 1 |
| 5 | Chertanovo M. | Volgar-Astrakhan 2 | 1 : 2 |
| 6 | Krasnodar 2 | Spartak Moscow 2 | 1 : 3 |
| 7 | Fakel Voronezh | Tyumen | 3 : 1 |
| 8 | Volgar-Astrakhan | Orenburg | 0 : 1 |
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