2016 Fall Season
| Pl | W | D | L | Diff | Pts | |||
| 1 | New York Cosmos | 22 | 14 | 5 | 3 | 44:21 | 23 | 47 |
| 2 | Indy Eleven | 22 | 11 | 4 | 7 | 36:25 | 11 | 37 |
| 3 | Edmonton | 22 | 10 | 6 | 6 | 16:14 | 2 | 36 |
| 4 | Rayo | 22 | 9 | 8 | 5 | 28:21 | 7 | 35 |
| 5 | Miami FC | 22 | 9 | 6 | 7 | 31:27 | 4 | 33 |
| 6 | North Carolina | 22 | 7 | 5 | 10 | 25:35 | -10 | 26 |
| 7 | Fort Lauderdale Strikers | 22 | 7 | 5 | 10 | 19:28 | -9 | 26 |
| 8 | Minnesota United | 22 | 6 | 7 | 9 | 25:25 | 0 | 25 |
| 9 | Puerto Rico | 22 | 5 | 9 | 8 | 19:31 | -12 | 24 |
| 10 | Jacksonville A | 22 | 5 | 8 | 9 | 25:35 | -10 | 23 |
| 11 | Tampa Bay | 22 | 5 | 8 | 9 | 29:32 | -3 | 23 |
| 12 | Ottawa Fury | 22 | 5 | 7 | 10 | 23:26 | -3 | 22 |
2016 Play Offs
Semi-finals
| 1 | New York Cosmos | Rayo | 2 : 1 |
| 2 | Indy Eleven | Edmonton | 1 : 0 |
Final
| 1 | New York Cosmos | Indy Eleven | 1 : 0 |
2016 Spring Season
| Pl | W | D | L | Diff | Pts | |||
| 1 | New York Cosmos | 10 | 6 | 0 | 4 | 15:8 | 7 | 18 |
| 2 | Indy Eleven | 10 | 4 | 6 | 0 | 15:8 | 7 | 18 |
| 3 | Edmonton | 10 | 5 | 2 | 3 | 9:7 | 2 | 17 |
| 4 | Minnesota United | 10 | 5 | 1 | 4 | 16:12 | 4 | 16 |
| 5 | Tampa Bay | 10 | 4 | 4 | 2 | 11:9 | 2 | 16 |
| 6 | Fort Lauderdale Strikers | 10 | 4 | 3 | 3 | 12:12 | 0 | 15 |
| 7 | North Carolina | 10 | 4 | 2 | 4 | 11:13 | -2 | 14 |
| 8 | Rayo | 10 | 3 | 3 | 4 | 11:12 | -1 | 12 |
| 9 | Ottawa Fury | 10 | 2 | 3 | 5 | 9:14 | -5 | 9 |
| 10 | Jacksonville A | 10 | 1 | 4 | 5 | 5:11 | -6 | 7 |
| 11 | Miami FC | 10 | 1 | 4 | 5 | 7:15 | -8 | 7 |
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