2016 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | Marijampole City | 30 | 23 | 3 | 4 | 95:25 | 70 | 72 |
| 2 | Palanga | 30 | 21 | 7 | 2 | 96:29 | 67 | 70 |
| 3 | Vilniaus Vytis | 30 | 19 | 3 | 8 | 102:34 | 68 | 60 |
| 4 | Nevezis Kedainiai | 30 | 17 | 9 | 4 | 76:38 | 38 | 60 |
| 5 | FK Panevezys | 30 | 17 | 8 | 5 | 68:35 | 33 | 59 |
| 6 | Banga | 30 | 15 | 7 | 8 | 62:31 | 31 | 52 |
| 7 | Dziugas Telsiai | 30 | 15 | 3 | 12 | 51:44 | 7 | 48 |
| 8 | Zalgiris 2 | 30 | 14 | 3 | 13 | 62:61 | 1 | 45 |
| 9 | Dainava Alytus | 30 | 13 | 4 | 13 | 57:46 | 11 | 43 |
| 10 | Hegelmann | 30 | 13 | 3 | 14 | 55:56 | -1 | 42 |
| 11 | Riteriai 2 | 30 | 9 | 3 | 18 | 44:59 | -15 | 30 |
| 12 | Silute | 30 | 8 | 6 | 16 | 38:60 | -22 | 30 |
| 13 | Krazante Kelme | 30 | 8 | 4 | 18 | 47:86 | -39 | 28 |
| 14 | Lokomotyvas | 30 | 6 | 5 | 19 | 42:86 | -44 | 23 |
| 15 | FBK Kaunas | 30 | 4 | 1 | 25 | 25:134 | -109 | 13 |
| 16 | FK Minija | 30 | 3 | 1 | 26 | 27:123 | -96 | 10 |
Promotion ~ A Lyga
Promotion ~ A Lyga (Promotion: )
Relegation
2016 Promotion
Final
| 1 | Palanga | Utenis | 1 : 0, 2 : 3 |
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