2016 Main
Group A
| Pl | W | D | L | Diff | Pts | |||
| 1 | Wydad | 6 | 3 | 2 | 1 | 6:3 | 3 | 11 |
| 2 | ZESCO | 6 | 2 | 3 | 1 | 10:9 | 1 | 9 |
| 3 | Al Ahly | 6 | 1 | 3 | 2 | 6:7 | -1 | 6 |
| 4 | ASEC Mimosas | 6 | 1 | 2 | 3 | 5:8 | -3 | 5 |
Group B
| Pl | W | D | L | Diff | Pts | |||
| 1 | Mamelodi Sundowns | 4 | 3 | 0 | 1 | 6:5 | 1 | 9 |
| 2 | Zamalek | 4 | 2 | 0 | 2 | 3:3 | 0 | 6 |
| 3 | Enyimba | 4 | 1 | 0 | 3 | 4:5 | -1 | 3 |
| 4 | ES Setif | 0 | 0 | 0 | 0 | 0:0 | 0 | 0 |
Promotion ~ CAF Champions League
2016 Play Offs
Semi-finals
| 1 | Zamalek | Wydad | 2 : 5, 4 : 0 |
| 2 | ZESCO | Mamelodi Sundowns | 0 : 2, 2 : 1 |
Final
| 1 | Zamalek | Mamelodi Sundowns | 1 : 0, 0 : 3 |
2016 Qualification
Quarter-finals
| 1 | Mafunzo | AS Vita Club | 0 : 1, 0 : 3 |
| 2 | Centre Chiefs | Ferroviario Maputo (WO.) | |
| 3 | Chicken Inn | Mamelodi Sundowns | 0 : 2, 1 : 0 |
| 4 | Bye | Leopard | |
| 5 | Warri Wolves | Praia Cruz | 3 : 0, 3 : 0 |
| 6 | Bye | Al-Merreikh | |
| 7 | Mangasport | Etoile du Congo | 0 : 3, 0 : 0 |
| 8 | Bye | ES Setif | |
| 9 | Wydad | Douanes Niamey | 1 : 2, 2 : 0 |
| 10 | Gor Mahia | CNaPS Sport | 0 : 1, 1 : 2 |
| 11 | St. George | St Michel United | 1 : 1, 3 : 0 |
| 12 | Bye | Mazembe | |
| 13 | Vipers | Enyimba | 0 : 2, 1 : 0 |
| 14 | Lioli | Vital'O | 1 : 0, 1 : 2 |
| 15 | Olympique Khouribga | Gamtel | 2 : 1, 2 : 1 |
| 16 | Bye | Etoile Sahel | |
| 17 | Stade Malien | Bobo-Dioulasso | 1 : 0, 3 : 1 |
| 18 | Bye | Cotonsport | |
| 19 | ZESCO | Al-Ghazal | 1 : 0, 2 : 0 |
| 20 | Douanes | Horoya | 0 : 4, 0 : 0 |
| 21 | Mbabane Swallows | APR | 1 : 4, 1 : 0 |
| 22 | Cercle De Joachim | Young Africans | 0 : 2, 0 : 1 |
| 23 | C.R.D. Libolo | Micomeseng | 4 : 0, 5 : 1 |
| 24 | Bye | Al Ahly | |
| 25 | Volcan Club | Kaizer Chiefs | 0 : 4 |
| 26 | CotonTchad | ASEC Mimosas | 0 : 0, 0 : 1 |
| 27 | Onze Createurs | Al Ahly Tripoli | 0 : 0, 1 : 2 |
| 28 | Bye | Al-Hilal Omdurman | |
| 29 | Nimba United | Union Douala | 0 : 1, 1 : 3 |
| 30 | Bye | Zamalek | |
| 31 | Club Africain | Tanda | 0 : 0, 2 : 0 |
| 32 | Ashanti | MO Bejaia | 1 : 3, 1 : 0 |
Semi-finals
| 1 | AS Vita Club | Ferroviario Maputo | 1 : 1, 1 : 0 |
| 2 | Mamelodi Sundowns | Leopard | 1 : 1, 2 : 0 |
| 3 | Warri Wolves | Al-Merreikh | 0 : 1, 0 : 1 |
| 4 | Etoile du Congo | ES Setif | 2 : 4, 1 : 1 |
| 5 | Wydad | CNaPS Sport | 1 : 2, 5 : 1 |
| 6 | St. George | Mazembe | 0 : 1, 2 : 2 |
| 7 | Enyimba | Vital'O | 1 : 2, 5 : 1 |
| 8 | Olympique Khouribga | Etoile Sahel | 0 : 2, 1 : 1 |
| 9 | Stade Malien | Cotonsport | 0 : 1, 2 : 0 |
| 10 | ZESCO | Horoya | 0 : 2, 4 : 1 |
| 11 | APR | Young Africans | 1 : 1, 1 : 2 |
| 12 | C.R.D. Libolo | Al Ahly | 0 : 2, 0 : 0 |
| 13 | Kaizer Chiefs | ASEC Mimosas | 0 : 0, 0 : 1 |
| 14 | Al Ahly Tripoli | Al-Hilal Omdurman | 1 : 2, 1 : 0 |
| 15 | Union Douala | Zamalek | 0 : 2, 0 : 1 |
| 16 | Club Africain | MO Bejaia | 0 : 2, 1 : 0 |
Final
| 1 | AS Vita Club | Mamelodi Sundowns | 1 : 2, 1 : 0 |
| 2 | Al-Merreikh | ES Setif | 0 : 0, 2 : 2 |
| 3 | Wydad | Mazembe | 1 : 1, 2 : 0 |
| 4 | Enyimba | Etoile Sahel | 1 : 3, 3 : 0 |
| 5 | Stade Malien | ZESCO | 1 : 2, 1 : 3 |
| 6 | Young Africans | Al Ahly | 1 : 2, 1 : 1 |
| 7 | ASEC Mimosas | Al Ahly Tripoli | 1 : 2, 2 : 0 |
| 8 | Zamalek | MO Bejaia | 1 : 1, 2 : 0 |
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