2016 Final Stage
Quarter-finals
| 1 | Perth SC | Devonport | 6 : 1 |
| 2 | Bentleigh Greens | Edgeworth E. | 1 : 3 |
| 3 | Sydney Utd | Adelaide City | 5 : 4 |
| 4 | Canberra Olympic | Brisbane Strikers | 2 : 3 |
Semi-finals
| 1 | Perth SC | Edgeworth E. | 0 : 1 |
| 2 | Sydney Utd | Brisbane Strikers | 2 : 1 |
Final
| 1 | Edgeworth E. | Sydney Utd | 1 : 4 |
2016 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | Bentleigh Greens | 26 | 18 | 5 | 3 | 61:22 | 39 | 59 |
| 2 | Heidelberg Utd | 26 | 17 | 5 | 4 | 59:26 | 33 | 53 |
| 3 | South Melbourne | 26 | 18 | 2 | 6 | 64:39 | 25 | 53 |
| 4 | Oakleigh Cannons | 26 | 14 | 5 | 7 | 48:36 | 12 | 47 |
| 5 | Green Gully | 26 | 13 | 5 | 8 | 42:30 | 12 | 44 |
| 6 | Hume City | 26 | 13 | 4 | 9 | 47:25 | 22 | 43 |
| 7 | Pascoe Vale | 26 | 11 | 4 | 11 | 38:36 | 2 | 37 |
| 8 | Avondale FC | 26 | 10 | 5 | 11 | 37:42 | -5 | 35 |
| 9 | Melbourne Knights | 26 | 9 | 4 | 13 | 30:51 | -21 | 31 |
| 10 | Port Melbourne Sharks | 26 | 7 | 5 | 14 | 26:38 | -12 | 26 |
| 11 | Bulleen | 26 | 5 | 10 | 11 | 21:32 | -11 | 25 |
| 12 | Richmond | 26 | 5 | 8 | 13 | 37:58 | -21 | 23 |
| 13 | Northcote City | 26 | 5 | 5 | 16 | 27:58 | -31 | 20 |
| 14 | Melbourne Victory U21 | 26 | 3 | 1 | 22 | 24:68 | -44 | 4 |
Promotion ~ National Premier Leagues Play Offs
Promotion ~ NPL Victoria (Play Offs: )
2016 Play Offs
Quarter-finals
| 1 | Bentleigh Greens | Bye | |
| 2 | Green Gully | Oakleigh Cannons | 2 : 5 |
| 3 | Heidelberg Utd | Bye | |
| 4 | Hume City | South Melbourne | 0 : 3 |
Semi-finals
| 1 | Bentleigh Greens | Oakleigh Cannons | 1 : 3 |
| 2 | Heidelberg Utd | South Melbourne | 1 : 2 |
Final
| 1 | Oakleigh Cannons | South Melbourne | 2 : 3 |
Redes Sociales